PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G106200.1
Common NameB456_011G106200, LOC105777736
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 488aa    MW: 54195.9 Da    PI: 8.146
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G106200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.61e-15156205155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++grW+++I+d      + k+++lg f+ +  Aa+a+++a+ k++g
  Gorai.011G106200.1 156 SQYRGVTYYRRTGRWESHIWD------CgKQVYLGGFDAPHAAARAYDRAAIKFRG 205
                         78*******************......55************************997 PP

2AP244.15.1e-14248298155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV+ +k  grW+A++  +     +k+++lg f+t+ eAa+a+++a+ k +g
  Gorai.011G106200.1 248 SKYRGVTLHK-CGRWEARLGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 298
                         89********.7******5553..1.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-15156214IPR016177DNA-binding domain
PfamPF008474.0E-8156205IPR001471AP2/ERF domain
CDDcd000183.97E-11157212No hitNo description
Gene3DG3DSA:3.30.730.107.6E-16157213IPR001471AP2/ERF domain
PROSITE profilePS5103217.148157213IPR001471AP2/ERF domain
SMARTSM003808.0E-30157219IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-17248308IPR016177DNA-binding domain
PfamPF008471.7E-9248298IPR001471AP2/ERF domain
CDDcd000181.13E-24248308No hitNo description
Gene3DG3DSA:3.30.730.102.6E-16249306IPR001471AP2/ERF domain
SMARTSM003802.1E-30249312IPR001471AP2/ERF domain
PROSITE profilePS5103215.672249306IPR001471AP2/ERF domain
PRINTSPR003675.8E-6250261IPR001471AP2/ERF domain
PRINTSPR003675.8E-6288308IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0010093Biological Processspecification of floral organ identity
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MWDLNDCPYK ARDDEYEGCS TQRTSKYGDA GNCKRFGSMS NSCSSAVVIE DGSEEEEDRE  60
GVKTALKKKG SKIFGFSVPY DEEESMQSSD PTPVTRQLFP LDEDPEMGTG AGPGFPRAHW  120
VGIKFRQSEP YLCGGKSVES SGPMKKSRRG PRSRSSQYRG VTYYRRTGRW ESHIWDCGKQ  180
VYLGGFDAPH AAARAYDRAA IKFRGVEADI NFSVEDYEED LKQMRNLTKE EFVHVLRRQS  240
TGFPRGSSKY RGVTLHKCGR WEARLGQFLG KKYVYLGLFD TEIEAARAYD KAAIKCNGKD  300
AVTNFDPSIY GNELNNGGET SGNAGGGHNL DLSLGNSVSK QNNPESGPPQ TDWRYQGFKP  360
EEIQQQEQAC RGDDPHRRSD KHIQSPLSVK SNEMQRYGQL RRPGPGENHM SHILPPRIVN  420
PSIYQIHIAS NSGNGVQIGS DVSLSTSAQQ GPHQLIANAG AASSGFPTQT WQQRNGFHSF  480
ITPSRLF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012456588.10.0PREDICTED: floral homeotic protein APETALA 2-like isoform X1
RefseqXP_012456587.10.0PREDICTED: floral homeotic protein APETALA 2-like isoform X1
SwissprotP479271e-124AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLA0A0D2RK800.0A0A0D2RK80_G
STRINGVIT_07s0031g00220.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22972875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-103AP2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]